2002 Nemuro Workshop

MODEL/REX Workshop to Develop a Marine Ecosystem Model of the North Pacific Ocean Including Pelagic Fishes

In 2002, MODEL held their second workshop jointly with REX in Nemuro Japan. The objective was to couple NEMURO, the PICES lower trophic level model of marine ecosystems, to a higher trophic level model of fishes so that effects of climate change on coastal ecosystems could be examined. It was named NEMURO.FISH, the North Pacific Ecosystem Model for Understanding Regional Oceanography. For Including Saury and Herring. and was configured for saury populations off Japan and herring populations off the west coast of North America.

The files presented here are copies of the model code, data files and output that were generated at the meeting. Full details of the workshop and detailed documentation of the model can be found in the workshop report.
NEMURO.FISH MATLAB Code
Consumption.m Consumption as a function of body size and temperature
FeedingFunctionalResponse.m Feeding functional response in a mutispecies setting
PlotHerringModelOutput.m Fish bioenergetics model plotting routine (time dependent solution)
PlotHerringSizeatage.m Fish bioenergetics model plotting routine (size at age compaison)
Respiration.m Respiration as a function of body size and temperaturen
Download zip file, < 0.1 Mb (NEMURO.FISH MATLAB Code)  
NEMURO.FISH FORTRAN Code
compareEuler.out Fish bioenergetics output file (time dependent solution)
Der.for Fish bioenergetics code - derivative subroutine
Euler.for Fish bioenergetics code - Euler numerical integration subroutinen
FishBioenergeticsHerring.exe Fish bioenergetics code (executable) configured for herring
FishBioenergeticsHerring.for Fish bioenergetics code configured for herring
Kutta.for Fish bioenergetics code - Runge Kutta 4th order numerical integration subroutine
nemuro.txt Nemuro LTL output used to drive the fish bioenergetics model
NemuroFish2Oneway.exe NEMURO.FISH executable - static link with with actual light and temperature functions used to force LTL
NemuroFish2Oneway.for NEMURO.FISH code - static link with with actual light and temperature functions used to force LTL
NemuroFishOneway.exe NEMURO.FISH executable - static link with predicted light and temperature functions
NemuroFishOneway.for NEMURO.FISH code - static link with predicted light and temperature functions
Results.csv NEMURO.FISH output file
sizeatage.out Fish bioenergetics output file (size-at-age)
sizeaa.cmn Fish bioenergetics code - size at age common block
state.cmn Fish bioenergetics code - state variable common blockon
stuff.cmn Fish bioenergetics code - miscellaneous varibles common block
Surf_91-96.dat NEMURO.FISH input data file of actual light and temperature functions used to force LTL
Download zip file, 1.4 Mb (NEMURO.FISH FORTRAN Code)  
Workshop Reports
Picture of NEMURO.FISH Image of the NEMURO.FISH Model
Sci. Rep. 20 [1.2 Mb] 2002 MODEL/REX Workshop Report

Author: Bernard A. Megrey
Created: 11 February 2003
Last Updated: 08 May 2006